PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 89139
Common NameSELMODRAFT_89139
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 541aa    MW: 60362.7 Da    PI: 5.9769
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
89139genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06328426
             ---SGGGGTS...--TTTTT-SS-SS CS
  zf-CCCH  4 elCrffartG...tCkyGdrCkFaHg 26
             e C+   r G    C++G++C+F+H+
    89139  3 EVCNAVVRAGdpnACPFGENCRFSHD 28
             66777777888889***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.211130IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.3194368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.703.8E-74184428IPR013785Aldolase-type TIM barrel
CDDcd028013.37E-96188423No hitNo description
SuperFamilySSF513951.1E-65188501No hitNo description
PfamPF012072.8E-52191430IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360272290IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
KLEVCNAVVR AGDPNACPFG ENCRFSHDLE GYLAQKPEDL PGVCPSVNLN VPCPYGVRCR  60
FYGTHTKQDL PKENPEGAMD GDEETSGAGE INVLRKDFQK SLWKKLESFP KADGQLQAMG  120
LKVSFFGATT EGENGGAETH DENNDVSDDA VPPLKKPKLV DPVDDAKEQG DDCKLNSREK  180
KKIDLKGKLY LAPLTTVGNL PFRRLCKKLG ADVTCGEMAM CTNLLQGHAS EWALLRRHPV  240
EDCFGVQICG SYADSLTKTV ELIERECTVD FIDINLGCPI DIVVKKGAGS CLLTKPTRLE  300
QIVRATASIV EKPLTLKMRT GYFEGKNCAH SMISELSNWG VSAVTVHGRT RQQRYSKLAD  360
WVYIYDCAKR APDDLQVLGN GDIFSYSDWN EHMLPDLNLS SCMLARGALI KPWLLTEIKE  420
QRHWDISSNE RLDLLRDYTQ FGLEHWGSDS KGVETTRKFL LEWLSYLHRY IPVGLLEVIP  480
QRLNWRPPRY VGRNDLETLM ASDSAADWVR ISEMLLGPAP EGFVFTPKHK SSAYDKAENG  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vhn_A8e-251834601271putative flavin oxidoreductase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024528882.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLD8RB360.0D8RB36_SELML; tRNA-dihydrouridine(47) synthase [NAD(P)(+)] (Fragment)
STRINGEFJ304210.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP57511213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-06C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]