PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 891481
Common NameARALYDRAFT_891481
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 154aa    MW: 17178.5 Da    PI: 9.8145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
891481genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-173079255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
             y+G+r++k +g+WvAeIr+p   +kr r +lg++ t   Aa+a++ a  +l+g
  891481 30 PYRGIRRRK-WGKWVAEIREP---NKRSRLWLGSYTTDVAAARAYDVAVFYLRG 79
            69****998.**********9...336**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.0243087IPR001471AP2/ERF domain
SMARTSM003805.4E-363093IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213088IPR016177DNA-binding domain
PfamPF008471.8E-113179IPR001471AP2/ERF domain
PRINTSPR003673.8E-123142IPR001471AP2/ERF domain
CDDcd000182.70E-263189No hitNo description
Gene3DG3DSA:3.30.730.102.4E-303188IPR001471AP2/ERF domain
PRINTSPR003673.8E-126989IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEREQEESTM RKRRQPPQEE MASHVATRKP YRGIRRRKWG KWVAEIREPN KRSRLWLGSY  60
TTDVAAARAY DVAVFYLRGP SARLNFPDLL LQEEDHRLAA ATADMPAALI REKAAEVGAR  120
VDALLASAAP STADSSPPVI KPDLNQIPES GDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1526871072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914MRKRRQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap891481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0838351e-178AC083835.5 Arabidopsis thaliana chromosome 1 BAC F2G19 genomic sequence, complete sequence.
GenBankAY0868381e-178AY086838.1 Arabidopsis thaliana clone 28451 mRNA, complete sequence.
GenBankBT0246911e-178BT024691.1 Arabidopsis thaliana At1g46768 mRNA, complete cds.
GenBankCP0026841e-178CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322276.11e-100related to AP2 1
RefseqNP_564496.11e-100related to AP2 1
SwissprotQ8LC301e-101RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLD7KPW51e-106D7KPW5_ARALL; Uncharacterized protein
STRINGscaffold_104275.11e-107(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.14e-71related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]