PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 891573
Common NameARALYDRAFT_891573
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 176aa    MW: 19992.4 Da    PI: 9.9905
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
891573genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.72.6e-12957149
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
            krien++ r+ tf + r  i+KKA  L  L  +evav+++s+t+  y+y
  891573  9 KRIENSIERNATFLRLRDDIFKKADALAKLYHVEVAVLVISPTNVPYTY 57
            79******************************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.054161IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-18386IPR002100Transcription factor, MADS-box
PfamPF003191.0E-131057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGPRKIEIKR IENSIERNAT FLRLRDDIFK KADALAKLYH VEVAVLVISP TNVPYTYGNP  60
CFNDVVEHIQ NPSASSKIVS LMKELECIKE LEEVWTKRQQ RNHEKSNMKG IVDLKVEDLV  120
AFKGKLEAFQ VGLKRKIVEM EDLSSPSMVS KKTKKRRQGP SFIPDRAGKC MCFGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150157KKTKKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap891573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891383.11e-127MADS-box transcription factor 27
TrEMBLD7KBW31e-126D7KBW3_ARALL; Uncharacterized protein
STRINGscaffold_104367.11e-127(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16164513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.12e-79AGAMOUS-like 102