PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 891578
Common NameARALYDRAFT_891578
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 182aa    MW: 21160.7 Da    PI: 10.1921
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
891578genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-13957149
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
            krien++ r+ tf + r  i+KKA  L  LC +ev v+++s+t+  y+y
  891578  9 KRIENSIERKATFLRLRDDIFKKADALEKLCHVEVVVLVISPTNVPYTY 57
            79******************************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.465161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-20285IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-11323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-141057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRRKIEIKR IENSIERKAT FLRLRDDIFK KADALEKLCH VEVVVLVISP TNVPYTYGNP  60
CFSDVVEHIQ NPSASSKLVS LMKELERIKE LEEVLTKRQQ RNREKSKRIV DLKLEELVAF  120
KRNLEAFHAG LKRKHVEMED LSSPSMFSKN TKKKKTRTEF LPDRAEKCMT FGPTIPQNYL  180
E*
Cis-element ? help Back to Top
SourceLink
PlantRegMap891578
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891385.21e-102LOW QUALITY PROTEIN: MADS-box transcription factor 32
TrEMBLD7KBW71e-129D7KBW7_ARALL; Uncharacterized protein
STRINGscaffold_104372.11e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16164513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.11e-83AGAMOUS-like 102