PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 891632
Common NameARALYDRAFT_891632
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 83aa    MW: 9354.61 Da    PI: 8.2836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
891632genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.29.1e-115781226
             -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
             ++++C++++r+G+Ck G++CkF H+
   891632 57 DQAICPHYSRFGICKSGPTCKFDHS 81
             6899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.976937IPR000571Zinc finger, CCCH-type
SMARTSM003560.13936IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-51437IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-75381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5915582IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-45582IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-85781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-46081IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MSDGNFPERP GEPECSYYLR TGNCYLKQNC KYHHPKNITP REPPCPLNDK GLPLRPDQAI  60
CPHYSRFGIC KSGPTCKFDH ST*
Cis-element ? help Back to Top
SourceLink
PlantRegMap891632
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0236731e-106AC023673.3 Genomic sequence for Arabidopsis thaliana BAC F21D18 from chromosome I, complete sequence.
GenBankCP0026841e-106CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891416.14e-55zinc finger CCCH domain-containing protein 13
SwissprotQ3ECU84e-49C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLD7KC268e-54D7KC26_ARALL; Zinc finger (CCCH-type) family protein
STRINGscaffold_104426.11e-54(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.12e-51C3H family protein