PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

892497

Common Name

ARALYDRAFT_892497

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 334aa MW: 36552.1 Da PI: 5.2797

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
892497	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	34.1	7.5e-11	193	217	2	26
DUF573 2 lfqrlwseeDeivlLqGlidfkakt 26 fqrlwseeDeivlLqG+idf ++t 892497 193 PFQRLWSEEDEIVLLQGMIDFSSDT 217 59*******************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAKKKQSQTL VTPSAAKKSS EVASTSKKPL GVTSPVKKQS GVTSPVKKPS EAASLAKKPL 60 EVVASTSKKP LKETSTTAKK MQPEPVKNPP PESSSDSEEE SDSSSEEEDE SSKDFGKKTA 120 SAPVVTNENS DSKLESETES VSYSKTEPTT KTPTTDAVVV SSPNKKRQSE GEPSTEVKRA 180 KTETETETAK KPPFQRLWSE EDEIVLLQGM IDFSSDTDHD KKCFELANMI WGSDVDATLV 240 KSTKKIKVDD SLKVDVVNVE CDWFERSFIV GAFKNLGAGV DEETLKEKWY LVPVRTRKMI 300 EEKIKSVQAN EIKLVLQKLD VLHEVSSMMA NSD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	892497

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871017.1	0.0	probable transcription factor At4g00610 isoform X1
Swissprot	O65270	3e-50	STKLQ_ARATH; Probable transcription factor At4g00610
TrEMBL	D7KM55	0.0	D7KM55_ARALL; Uncharacterized protein
STRING	scaffold_105291.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00610.1	6e-46	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	892497
Entrez Gene	9327873