PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 892661
Common NameARALYDRAFT_892661
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 78aa    MW: 9083.61 Da    PI: 10.5668
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
892661genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_160.14.4e-19868262
            XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
            ++ +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le+ N++L ke+ee +ke +k  ++
  892661  8 AAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEGNEKLLKEIEESTKERYKKLMD 68
            5789**************************************************9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-14562No hitNo description
SMARTSM003384.6E-13771IPR004827Basic-leucine zipper domain
PfamPF001702.9E-18868IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.634961IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-111163No hitNo description
PROSITE patternPS0003601429IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MTKAMDKAAA QRQKRMIKNR ESAARSRERK QAYQVELETL AAKLEEGNEK LLKEIEESTK  60
ERYKKLMDVL IPFSKRL*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap892661
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0030273e-89AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence.
GenBankAY0876033e-89AY087603.1 Arabidopsis thaliana clone 36980 mRNA, complete sequence.
GenBankBT0244953e-89BT024495.1 Arabidopsis thaliana At1g03970 mRNA, complete cds.
GenBankCP0026843e-89CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU018233e-89U01823.1 Arabidopsis thaliana Columbia bZIP protein GBF4 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894569.22e-47G-box-binding factor 4
SwissprotP427778e-38GBF4_ARATH; G-box-binding factor 4
TrEMBLD7KNY18e-46D7KNY1_ARALL; Uncharacterized protein
STRINGscaffold_105455.11e-46(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.12e-29G-box binding factor 4