PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

893630

Common Name

ARALYDRAFT_893630

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

BBR-BPC

Protein Properties

Length: 56aa MW: 6401.47 Da PI: 11.5057

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
893630	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	91.5	2.9e-28	1	55	247	301
GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++++r++R+ grK+S+ + ++lL++La eG++ls p+DLkd+W +HGtn+++ti+ 893630 1 MPNKRHSRVCGRKVSGIVLSRLLSRLAREGHELSSPLDLKDYWVRHGTNRYITIK 55 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.4E-25	1	55	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 56 aa Download sequence Send to blast
MPNKRHSRVC GRKVSGIVLS RLLSRLAREG HELSSPLDLK DYWVRHGTNR YITIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	893630

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020875421.1	2e-26	protein BASIC PENTACYSTEINE5 isoform X1
Refseq	XP_020875422.1	1e-26	protein BASIC PENTACYSTEINE5 isoform X2
Swissprot	F4JUI3	7e-27	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	D7KXV6	5e-32	D7KXV6_ARALL; Uncharacterized protein
STRING	scaffold_200704.1	8e-33	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM30335	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.1	2e-29	basic pentacysteine 5

Link Out ? help Back to Top
Phytozome	893630
Entrez Gene	9324269