PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 893748
Common NameARALYDRAFT_893748
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 102aa    MW: 11728.5 Da    PI: 9.979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
893748genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.4e-12896289
            EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
      B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
            +k+l+ sd + s+ l+lpk+++e++       ++++++++ + d  ++s+ v+l  r ++++ ++++GWk+  +a  Lk+gD++ ++ ++ ++
  893748  8 VKKLKDSDLSYSNALYLPKDYVENIvrstgVPIPRNGIQVEILDN-NNSYWVNL--RENQKGPYIGNGWKNIKDARSLKTGDVIKLYWKD-TK 96
            6999******************999*9988455678888999995.566669**..99999************************99543.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-12294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15396IPR015300DNA-binding pseudobarrel domain
CDDcd100173.49E-136100No hitNo description
SMARTSM010193.3E-87101IPR003340B3 DNA binding domain
PROSITE profilePS508639.467101IPR003340B3 DNA binding domain
PfamPF023621.7E-9896IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MNPNMMLVKK LKDSDLSYSN ALYLPKDYVE NIVRSTGVPI PRNGIQVEIL DNNNSYWVNL  60
RENQKGPYIG NGWKNIKDAR SLKTGDVIKL YWKDTKFIFS M*
Cis-element ? help Back to Top
SourceLink
PlantRegMap893748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886734.15e-68B3 domain-containing protein At1g08985
SwissprotQ8GWU16e-50Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLD7KYM61e-66D7KYM6_ARALL; Uncharacterized protein
STRINGscaffold_200822.12e-67(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.12e-52B3 family protein