PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

894128

Common Name

ARALYDRAFT_894128

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HSF

Protein Properties

Length: 118aa MW: 13757.7 Da PI: 6.229

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
894128	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	55.8	1.3e-17	26	112	4	95
HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST..T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk..hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 +lye+++d++++++isws +g+sf+v++e ef ++vL ++ ++++SF+R L++ g++kv++++++ we++ + F +++ + l+ 894128 26 PHLYEMVDDPSTDSIISWSGSGESFIVWNEPEFLRDVLLRHLGllYKEMTSFTRWLDVLGYRKVEESDEQ-------WEYAGDCFVNEHLHRLT 112 579*********************************9986422799****************99.......******998888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00056	9.6E-7	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	1.6E-13	24	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	8.3E-21	26	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.33E-18	27	113	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.5E-15	27	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.6E-7	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MAAIVNQHRS VVNKARPRRR SCLVIPHLYE MVDDPSTDSI ISWSGSGESF IVWNEPEFLR 60 DVLLRHLGLL YKEMTSFTRW LDVLGYRKVE ESDEQWEYAG DCFVNEHLHR LTHSLLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	894128

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470854.1	5e-34	PREDICTED: uncharacterized protein LOC104750710
TrEMBL	D7KSC6	1e-81	D7KSC6_ARALL; Uncharacterized protein
STRING	scaffold_201202.1	2e-82	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13231	11	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	3e-16	HSF family protein

Link Out ? help Back to Top
Phytozome	894128
Entrez Gene	9324483