PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 894282
Common NameARALYDRAFT_894282
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 141aa    MW: 15904.2 Da    PI: 10.39
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
894282genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd ll +++ ++G g W+ ++ + g++R++k c++rw++yl
           894282 10 KGTWTAEEDILLRKCIDKYGEGKWHQVPLRAGLNRCGKGCRLRWLNYL 57
                     799********************************************7 PP
2Myb_DNA-binding52.51.2e-1663107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++
           894282  63 RGNFSSDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTH 107
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-22360IPR009057Homeodomain-like
PROSITE profilePS5129424.15561IPR017930Myb domain
SuperFamilySSF466894.21E-297104IPR009057Homeodomain-like
SMARTSM007174.6E-12959IPR001005SANT/Myb domain
PfamPF002491.3E-141057IPR001005SANT/Myb domain
CDDcd001671.52E-91257No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2261108IPR009057Homeodomain-like
PROSITE profilePS5129417.17362112IPR017930Myb domain
SMARTSM007176.5E-1562110IPR001005SANT/Myb domain
PfamPF002494.7E-1563107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MESSSNGLRK GTWTAEEDIL LRKCIDKYGE GKWHQVPLRA GLNRCGKGCR LRWLNYLQPS  60
IKRGNFSSDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHFSC CKSKARKRES  120
TCSANSPIQS SCYKASTSIL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2381065102B-MYB
1gv2_A1e-238106299MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-23810625122MYB TRANSFORMING PROTEIN
1mse_C1e-238106299C-Myb DNA-Binding Domain
1msf_C1e-238106299C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap894282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0629159e-94AF062915.2 Arabidopsis thaliana putative transcription factor (MYB90) mRNA, MYB90-Col allele, complete cds.
GenBankAF3251249e-94AF325124.1 Arabidopsis thaliana production of anthocyanin pigment 2 protein (PAP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513544.11e-81PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV96e-66MY113_ARATH; Transcription factor MYB113
TrEMBLD7KTP33e-98D7KTP3_ARALL; Uncharacterized protein
STRINGscaffold_201356.16e-99(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.15e-66myb domain protein 114
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]