PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 895087
Common NameARALYDRAFT_895087
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25677.3 Da    PI: 9.0413
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
895087genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.22.8e-2057100649
             HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF   6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
             + +rqvtfskRr g++KKA ELSvLC+a++ +i fs  +++y +
  895087  57 ENRRQVTFSKRRFGLFKKAAELSVLCGAQIGIITFSRVDRIYSF 100
             579***********************************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-2644103IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.62844104IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-2245115IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-194666IPR002100Transcription factor, MADS-box
PfamPF003191.7E-2056100IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-196681IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-1981102IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEDGEAEAST ITCLPTTKQN PLQNPNLLVN PKKETKLKTP KTTKGRQKIE IKKIILENRR  60
QVTFSKRRFG LFKKAAELSV LCGAQIGIIT FSRVDRIYSF GNVDSLIDKY LRKTPVMLRS  120
HPGGNVANGE EDNDGLMWWE RAVESVPEED MEEYKKALSV LRENLLTRIY QMSGDRTVEN  180
LPAFPNEMAM ADWKLTNENL MARNDRGYAG NGGDLEFAFM SQNGRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-1545113268MEF2C
5f28_B1e-1545113268MEF2C
5f28_C1e-1545113268MEF2C
5f28_D1e-1545113268MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap895087
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0165290.0AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence.
GenBankAY1412350.0AY141235.1 Arabidopsis thaliana MADS-box protein AGL60 mRNA, complete cds.
GenBankBT0256470.0BT025647.1 Arabidopsis thaliana At1g72350 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464210.0DQ446421.1 Arabidopsis thaliana clone pENTR221-At1g72350 MADS-box protein (At1g72350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888870.11e-169agamous-like MADS-box protein AGL61
TrEMBLD7KZC61e-167D7KZC6_ARALL; MADS-box protein
STRINGscaffold_202161.11e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-131M-type_MADS family protein