PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 895541
Common NameARALYDRAFT_895541
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SBP
Protein Properties Length: 1035aa    MW: 114595 Da    PI: 8.3478
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
895541genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.16.7e-40128203277
             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
             Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+ 
  895541 128 CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTL 203
             *************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-33120189IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.752125202IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-37126207IPR004333Transcription factor, SBP-box
PfamPF031101.5E-28128201IPR004333Transcription factor, SBP-box
SuperFamilySSF484038.86E-8835928IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.9E-6835928IPR020683Ankyrin repeat-containing domain
CDDcd002041.08E-5838925No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1035 aa     Download sequence    Send to blast
MGEVGPQVAA PIPVHHPMRK KRELYSQPHW IVSSQLPRED DWHINKWKWD SQRFEAIELQ  60
GETLQLGGNN NNGGLSYKGE ERGLDLNLPS GFNDLEDTPV DLTRPSKKVR SGSTGSGGGG  120
GGGNYPKCQV DNCKEDLSIA KDYHRRHKVC EVHSKATKAL VGKQMQRFCQ QCSRFHLLSE  180
FDEGKRSCRR RLDGHNRRRR KTLPDVITSQ VVALENRDNT SNNANMDVMA LLTALVCAQG  240
KNEAITNGSP GVPQREQLLQ ILNKIKALPL PMDLASKLNN IGILARENPD QPSAMNPQNS  300
MNGASSPSTM DLLAALSATL GSSAPEAIAF LSQGGFGNKE NNDSTKLTSS DHGVTTNVEK  360
RTLEFPSFGR GERTSSSKHS PSQDSDSRGQ DTRSSLSLQL FTSSPEDESQ PTVASSTKYY  420
SSASSNPVED RSPSSSPVVQ ELFPLHTSPG TRRSNNYKNT SPIPRTSCLP LELFGASNRG  480
ATANPNSNVS RHQSGYASSG SDYSPPSLNS DAQDRTGKII FKLFEKDPSQ LPGTLRTEIY  540
RWLSSFPSEM ESYIRPGCVI LSVYVAMSAS AWEQLEENLL QRVSSLVQDS DFWRNTRFLV  600
NTGRQLASHK HGRIRLSKSW RTLNSPELIT VSPLAVVAGE ETALIVRGRN LTNDGIRLRC  660
AHMGNYTSIE VTGTEHRRTK FDELNVSSFK VQSASPVSLG RCFIEVENGF RGDNFPLIIA  720
NATICKELNC LEDEFHPKDV IEEQTQNLDR PRSREEVICF LNELGWLFQR KWTSDIHGES  780
DFSLPRFKFL LVCSVERDCC SLIRTVLDMM VERNLGKDGL MNKESLDMLA ETQLLNRAVK  840
RRNTKMAETL IHYSVNPSTK NFIFLPNIAG PGDITPLHLA ASTSGSDDMI DVLTNDPQEI  900
GLSCWNTLVD ASGQTPFRYA AMRNNHSYNT LVTRKLADKR NGQISLNIEN GIDQIGLSKR  960
LSSELKRSCN TCASVALKYQ KKVSSSRRLF PTPIIHSMLA VATVCVCVCV FMHAFPIVRQ  1020
GSHFSWGGLD YGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28112201184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1836841RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap895541
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2429580.0AJ242958.1 Arabidopsis thaliana partial mRNA for SPL1-Related3 protein (SPL1R3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887647.10.0squamosa promoter-binding-like protein 16 isoform X1
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLD7KTV10.0D7KTV1_ARALL; Uncharacterized protein
STRINGscaffold_202615.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein