PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

896042

Common Name

ARALYDRAFT_896042

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WRKY

Protein Properties

Length: 163aa MW: 18935.3 Da PI: 9.5508

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
896042	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.9	1.6e-31	82	140	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYY+Ct +gC+vkk+v+r d+ vv++tY+g H+h+ 896042 82 LDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRLWGDEGVVVTTYQGVHTHP 140 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.7E-33	67	140	IPR003657	WRKY domain
SuperFamily	SSF118290	8.37E-29	74	141	IPR003657	WRKY domain
PROSITE profile	PS50811	30.125	77	142	IPR003657	WRKY domain
SMART	SM00774	4.2E-37	82	141	IPR003657	WRKY domain
Pfam	PF03106	2.1E-25	83	140	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006817	Biological Process	phosphate ion transport
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008134	Molecular Function	transcription factor binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MEDRRCQVLF PCSSSVDPRL TEYHGVDNSA ECADQLTTSS LSQQNMNTNE EEKPKSKKKK 60 KKKKKEREAR YAFQTRSQVD ILDDGYRWRK YGQKAVKNNP FPRSYYKCTE EGCRVKKQVQ 120 RLWGDEGVVV TTYQGVHTHP VDKPSDNFNH ILTQMHIFPP FS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	72	139	7	74	Probable WRKY transcription factor 4
2lex_A	1e-27	72	139	7	74	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	64	KKKKKKKKK
2	58	64	KKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SI37}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00325	DAP	Transfer from AT3G01970	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	896042

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF426251	1e-136	AF426251.1 Arabidopsis thaliana WRKY transcription factor 45 (WRKY45) mRNA, complete cds.
GenBank	AK118457	1e-136	AK118457.1 Arabidopsis thaliana At3g01970 mRNA for putative WRKY-like transcriptional regulator protein, complete cds, clone: RAFL19-70-A15.
GenBank	AY085246	1e-136	AY085246.1 Arabidopsis thaliana clone 1415 mRNA, complete sequence.
GenBank	BT024684	1e-136	BT024684.1 Arabidopsis thaliana At3g01970 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882154.1	1e-121	probable WRKY transcription factor 45
Swissprot	Q9S763	8e-84	WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBL	D7L9J2	1e-119	D7L9J2_ARALL; Uncharacterized protein
STRING	scaffold_300012.1	1e-120	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01970.1	7e-85	WRKY DNA-binding protein 45

Link Out ? help Back to Top
Phytozome	896042
Entrez Gene	9318221

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen L,Xiang S,Chen Y,Li D,Yu D Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence. Mol Plant, 2017. 10(9): p. 1174-1189 [PMID:28735023]