PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

896916

Common Name

ARALYDRAFT_896916

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 224aa MW: 25848.8 Da PI: 9.0921

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
896916	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.6	2.4e-29	53	142	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA +GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vk+ek+gkw+vtkle+eHnH+l p 896916 53 SFYDNYAICMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRPRR-SESRKPRAITREGCKALIVVKREKSGKWVVTKLEKEHNHPLLP 142 5******************************************99.9*************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-27	53	142	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MFMCCVATVE GNSLPEEDVE MMENSDGMKT VESFPMVEPF IGMKFESEEA AKSFYDNYAI 60 CMGFVMRVDA FRRSMRDGTV VWRRLVCNKE GFRRSRPRRS ESRKPRAITR EGCKALIVVK 120 REKSGKWVVT KLEKEHNHPL LPLSPNVRRN PPLPQTPDEK DAKIRELSAE LSRERRRCTA 180 LQQQLDMVLK EMEEHSNHLS VNINNVIQSV RQIESNTFTK PLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	896916

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT004031	0.0	BT004031.1 Arabidopsis thaliana clone RAFL15-31-E07 (R20864) unknown protein (At3g07500) mRNA, complete cds.
GenBank	BT005083	0.0	BT005083.1 Arabidopsis thaliana clone U20864 unknown protein (At3g07500) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882533.2	1e-158	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_020888952.1	1e-158	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	D7L6L3	1e-164	D7L6L3_ARALL; Far-red impaired responsive family protein
STRING	scaffold_300886.1	1e-165	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-122	FAR1 family protein

Link Out ? help Back to Top
Phytozome	896916
Entrez Gene	9318600