PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 897310
Common NameARALYDRAFT_897310
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 255aa    MW: 28889.3 Da    PI: 5.1728
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
897310genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.86.5e-1427107286
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               W+++ + +Liea  ++  +l+rg+l++++W+ev++++   +  g  ++ +qCk++++ l+k+yk +k+   +       ++ +fd+l+
    897310  27 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVnssHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPLS-------NWCFFDRLD 107
               *************************************9666667788******************9987765.......588888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-2525108No hitNo description
SMARTSM005958.7E-434115IPR006578MADF domain
Gene3DG3DSA:1.10.601.107.5E-4138227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
METTPETQSK THQSGSNRLP AGREDWWSED ATATLIEAWG DRYVNLNRGN LRQNDWKEVA  60
DAVNSSHGNG RPKTDVQCKN RIDTLKKKYK TEKAKPLSNW CFFDRLDFLI GPVMKKSSGG  120
VVKSAFMNPN LNPTGSKSTG SSLDDDDDDD DDDEEDDDDA GDWGFVVRKH RKVEDVDPSE  180
GSAFRELARS ILKLGEAFER IEGKKQQMMI ELEKQRMEVA KELELQRMNM LMEMQLELEK  240
SKLGKRRAAS GKKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap897310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0641370.0AY064137.1 Arabidopsis thaliana AT3g11100/F11B9_105 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884830.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-32ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLD7L9U50.0D7L9U5_ARALL; Transcription factor
STRINGscaffold_301280.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-142sequence-specific DNA binding transcription factors