PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

897483

Common Name

ARALYDRAFT_897483

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 236aa MW: 26999.6 Da PI: 7.2557

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
897483	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108	4.9e-34	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av++LGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl 897483 23 KPRLRWTTELHERFVDAVTHLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.238	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-32	20	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-17	22	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-24	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	4.8E-8	25	75	IPR001005	SANT/Myb domain
Pfam	PF14379	5.9E-15	124	163	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MMQSRDEMRD ESSSGLVLTT DPKPRLRWTT ELHERFVDAV THLGGPDKAT PKTIMRVMGV 60 KGLTLYHLKS HLQKFRLGKQ PHKEHSQNHS ISIRDTNRAS MLDLRRNGVF TTNPLIIGRN 120 MNEMQMEVQR RIEEEVEIER QVNQRIEAQG KYMESILEKA CETQEASLTK DYSTLFFDRT 180 NICNNTSSIP IPWFEDHFPS SSSMDSALIL PDINSNFSLQ DSWSSITKGR TVCLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00351	DAP	Transfer from AT3G12730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	897483

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY070764	0.0	AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds.
GenBank	AY143916	0.0	AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884923.1	1e-177	myb family transcription factor PHL12
Swissprot	Q8VYI2	1e-169	PHLC_ARATH; Myb family transcription factor PHL12
TrEMBL	D7L0J8	1e-176	D7L0J8_ARALL; Myb family transcription factor
STRING	scaffold_301453.1	1e-177	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13745	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12730.1	1e-154	G2-like family protein

Link Out ? help Back to Top
Phytozome	897483
Entrez Gene	9320989

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]