PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 898633
Common NameARALYDRAFT_898633
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 437aa    MW: 50050.7 Da    PI: 5.518
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
898633genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.93.9e-09731126
             --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
             ykt+lC  f +tG C++ ++C+FaHg
   898633  7 YKTKLCILFKKTGDCSR-PNCSFAHG 31
             9****************.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.54E-6436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-12438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.657633IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-7731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MSGSSMYKTK LCILFKKTGD CSRPNCSFAH GNAELRRPGE SSFTGNDFKD SNSQIGRRHN  60
MDSDLRDRLG RQFSPERRPS LDRSGRRVQR FSGHDNPRPF ENRRDNEYRE NRRFDERRNY  120
AGGLKAGNRI EDRAEDGRNK FQGYNNVLEE QLKDVEMDVK MLTDDKQRLE ASVERKAHEV  180
DILSSRIHEL ETQLDREKEE CRRITSNTKK FVKEYNRFLR AQDDLKRSEA RLQKLGNQLS  240
TYLAGSEGNN RDAGVDIVSD EENNGRNLRA ACDPQNELQN TSSLSRKKHY VDQYTTKEPV  300
EDGLIGRGEE EKVEKEKKRP CWNMVSSKSY SEEESGAWND EDTINKSSSK EDNWKRRRIS  360
IGTSSTDKVI SSTSMAAREF DDDAESEEEN PEAAKGSPLI SLPPPPPFRD AHVQGDEDDV  420
SVDVMEQKKA NDDDSV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354358KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMap898633
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0598990.0AY059899.1 Arabidopsis thaliana Unknown protein (At3g21810; MSD21.12) mRNA, complete cds.
GenBankAY1287910.0AY128791.1 Arabidopsis thaliana unknown protein (At3g21810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887137.10.0zinc finger CCCH domain-containing protein 40 isoform X1
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLD7L0X00.0D7L0X0_ARALL; Uncharacterized protein
STRINGscaffold_302603.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.10.0C3H family protein