PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 899405
Common NameARALYDRAFT_899405
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 394aa    MW: 44490.7 Da    PI: 4.9429
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
899405genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.7e-274495152
  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52
             k+rlrW+ +LH++Fv ave+LGG++kAtPk+++e+m+v+g++l+hvkSHLQ 
   899405 44 KARLRWSRDLHDCFVTAVEKLGGPDKATPKSVKETMEVEGIALHHVKSHLQN 95
             68*************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-244195IPR009057Homeodomain-like
SuperFamilySSF466895.91E-114395IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-224495IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVIFSFLFIF IFLPIILSTT LTRKQITPKE GKITPCIFYT SDEKARLRWS RDLHDCFVTA  60
VEKLGGPDKA TPKSVKETME VEGIALHHVK SHLQNDLRLR RCREAQRMQT AFAIENQRNM  120
FETQYLKASM NPTLPSQYNN NISTSTTLSQ QSSSQEQWFI PLSYHFSEGD TNPFTMNYSQ  180
QPSIIIPQNT TSVKDFCNDD MACLSLSELN QNTCNTFSIY EASIHPTQGN LQLNDNQSYD  240
MAQGFVNPYM SIESQSMHGL STITTQQQLQ VNNSCVIHDS YHNATFSSAT VPPTINSLHQ  300
DTLNNTIVLS TTPQSIQASV PHNQYPPYNT LEVVKAQLNA LQDSSTNQTQ ETLSRGTTLS  360
SSVTRDEVDP VDTYIDWDKV NERDIELDLV EIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-154494252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-154494252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-154494151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-154494151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-154494151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-154494151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-154494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-154494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-154494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-154494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-154494252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-154494252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap899405
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300151.21e-122myb-related protein 1 isoform X1
TrEMBLD7L9D10.0D7L9D1_ARALL; Uncharacterized protein
STRINGscaffold_303375.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134061520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.14e-58G2-like family protein