PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

899560

Common Name

ARALYDRAFT_899560

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 233aa MW: 25997.6 Da PI: 9.9399

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
899560	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.6	5.5e-08	154	204	7	57
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 rr NR++ s qR +++ Le+k+k Le+eN ++ +++ l++ 899560 154 VRRILANRVSMVLSKQRQSQYVIDLEQKIKFLENENASMSEKITLLENDKT 204 578889****************************************99755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-7	148	212	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	4.8E-6	149	201	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.3E-8	153	206	No hit	No description
CDD	cd14703	2.85E-16	153	204	No hit	No description
SuperFamily	SSF57959	3.66E-8	153	207	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MNGSNNITPS GPRLMTQPSP ALSLPPLSRP SSSSFRRNSL PSMILSPSAH VESRDSSIRD 60 KKNPSLPPLD VKRRAEKDIE PLRRHNRSVS MDSFFNDLLK LTLSQGNVSS SSLVDGDKNA 120 SGLEFGSSDY TDDELNMIAE STKLKKIASD PVKVRRILAN RVSMVLSKQR QSQYVIDLEQ 180 KIKFLENENA SMSEKITLLE NDKTMMMNEK KEITIKIESL EQQVQLRDGT SF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	899560

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887778.1	1e-111	probable transcription factor PosF21
TrEMBL	D7L015	1e-164	D7L015_ARALL; Uncharacterized protein
STRING	scaffold_303530.1	1e-165	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19327	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G12940.1	8e-82	bZIP family protein

Link Out ? help Back to Top
Phytozome	899560
Entrez Gene	9321934