PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

899594

Common Name

ARALYDRAFT_899594

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB

Protein Properties

Length: 232aa MW: 26140.8 Da PI: 9.2075

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
899594	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	18	63	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ede l ++v ++G+++W+ Ia+++ gR++k+c++rw++ 899594 18 RGHWRLVEDENLRKLVVRHGPKNWNFIAQHFK-GRSGKSCRLRWYNQ 63 899**************************9.**********96 PP
2	Myb_DNA-binding	49.8	8.1e-16	71	112	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T eE+++l++a++ G++ W++Iar+++ gRt++ +k+r++ 899594 71 RPFTDEEEDRLLKAHAVQGNR-WASIARKFP-GRTDNAVKNRFH 112 69*****************.*****.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.468	13	68	IPR017930	Myb domain
SMART	SM00717	1.2E-13	17	66	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.05E-27	17	111	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-15	18	64	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-23	19	71	IPR009057	Homeodomain-like
CDD	cd00167	4.46E-13	21	62	No hit	No description
SMART	SM00717	2.1E-13	69	117	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.875	69	119	IPR017930	Myb domain
Pfam	PF00249	2.0E-13	70	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.46E-10	72	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.2E-20	72	115	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEVSRGSKSD ENNKSCQRGH WRLVEDENLR KLVVRHGPKN WNFIAQHFKG RSGKSCRLRW 60 YNQLDPNIQK RPFTDEEEDR LLKAHAVQGN RWASIARKFP GRTDNAVKNR FHVIVARCKR 120 EGGASNTNYT LPSLNNLNVE HWCYRATHTQ DSFPYCNSLL GSSSVSNDRH ASHFGNTSLV 180 GLEKNYKFHG TSDKSSSGDG LTSNLADDVG GENENYSVTF IDFLGVGLDS H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-30	18	117	7	106	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	899594

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002885886.1	1e-173	transcription factor MYB117
TrEMBL	D7L045	1e-172	D7L045_ARALL; Uncharacterized protein
STRING	scaffold_303564.1	1e-172	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM30350	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33450.1	2e-82	myb domain protein 69

Link Out ? help Back to Top
Phytozome	899594
Entrez Gene	9321952