PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

899900

Common Name

ARALYDRAFT_899900

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 256aa MW: 28304.9 Da PI: 5.6247

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
899900	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	37.6	6.1e-12	93	137	47	97
DUF573 47 fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 + +k+q+ +Kir LK+K+ + +kk +s++++hd+k++el+k+iWg 899900 93 SVKNKNQFGDKIRGLKNKYFGSRKK------KSVESDHDNKCLELAKSIWG 137 45689*****************9......8999*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.0E-8	91	137	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MAKKLLNPLE DPPTASSSDD DEVEISSEED EEQISNSSSK EEDPATIPST KTLKSPSAAA 60 PSPDSGSETD SDSDKPHVFT KKKEATDSPA VKSVKNKNQF GDKIRGLKNK YFGSRKKKSV 120 ESDHDNKCLE LAKSIWGRGV VESPVKSKKK KDESVVKANG KEKKLESLVE EDKELGILRG 180 DSESSNWFDK SFLVRVVASL GVDECIVKWK WSKVTMDTKK RIEEKMKLVE GKEFELLSQK 240 IDVLKEVISV IAETI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	899900

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY042861	2e-86	AY042861.1 Arabidopsis thaliana Unknown protein (T12C22.8) mRNA, complete cds.
GenBank	AY072504	2e-86	AY072504.1 Arabidopsis thaliana unknown protein (At1g44810; T12C22.8) mRNA, complete cds.
GenBank	CP002684	2e-86	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T12C22	2e-86	AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020886805.1	1e-107	probable transcription factor At1g44810
Swissprot	Q9LPF0	6e-58	STKLB_ARATH; Probable transcription factor At1g44810
TrEMBL	D7L6G9	1e-177	D7L6G9_ARALL; Uncharacterized protein
STRING	scaffold_303870.1	1e-178	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G44810.1	5e-59	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	899900
Entrez Gene	9320039

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]