PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 900000
Common NameARALYDRAFT_900000
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 256aa    MW: 27784.2 Da    PI: 6.4983
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
900000genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-0985127850
             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
             +r   NReA r++R++Kka+ + Le++v  L+a N +L k+l+
  900000  85 KRPLGNREAVRKYREKKKAKAASLEDEVMRLKAVNNQLLKRLQ 127
             77788**********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-1470146No hitNo description
SMARTSM003381.1E-1078145IPR004827Basic-leucine zipper domain
PfamPF077165.0E-1579127IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.55480127IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.0E-783127No hitNo description
CDDcd146863.55E-1284136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDDGELEFSN SNMGGELPPS SCSMDSFFDE LLRDSHACTH THTCNPPGPE NTHTHTCLHV  60
HTKILPSQSE DKVSTDDTSE SSGKKRPLGN REAVRKYREK KKAKAASLED EVMRLKAVNN  120
QLLKRLQGQA VLEAEVTRLK CLLVDIRGRI DGEIGAFPYQ KPAVTNVPYS YMMHPCNMQC  180
DVDNLYCLQN GNNGEGGSMN DQGLNGCEFD QLECLANPNL AGKEIPVCSN GIGTFTVNGS  240
GANKRKGGPR AAKAV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap900000
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1174790.0AK117479.1 Arabidopsis thaliana At2g16770 mRNA for putative bzip transcription factor atbzip23, complete cds, clone: RAFL17-09-E13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884017.10.0basic leucine zipper 23 isoform X1
SwissprotQ8GTS21e-180BZP23_ARATH; Basic leucine zipper 23
TrEMBLD7L8710.0D7L871_ARALL; DNA binding protein
STRINGscaffold_303970.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20362879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-176bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]