PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

900237

Common Name

ARALYDRAFT_900237

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 118aa MW: 13395.3 Da PI: 5.196

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
900237	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.7	2.8e-10	22	113	3	94
EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 k+lt dv++ +r+++pk +e+ g + ++++++ed + ++v++ r++ ++y+l++GW +a+gL+ D++ ++ d+ +++l + 900237 22 KTLTDFDVSNMARVIIPKIELEAEmGDDLIIGMDVSVEDvNREHPYSVTI-KRGGNDSYYLGNGWTVIKNAKGLNKDDVIGLSWDK-WNRKLDF 113 889999*************98885555599***66678899999.4666667*******************9999653.3444455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.73E-11	14	110	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.9E-12	16	109	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.75E-12	22	117	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MAQQYLKLEL GLGQPDPWNV RKTLTDFDVS NMARVIIPKI ELEAEMGDDL IIGMDVSVED 60 VNREHPYSVT IKRGGNDSYY LGNGWTVIKN AKGLNKDDVI GLSWDKWNRK LDFKLLR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	900237

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884140.1	8e-81	B3 domain-containing protein At1g10455
TrEMBL	D7L080	2e-79	D7L080_ARALL; Uncharacterized protein
STRING	scaffold_304207.1	3e-80	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	9e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	900237
Entrez Gene	9322245