PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 900280
Common NameARALYDRAFT_900280
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 69aa    MW: 7697.06 Da    PI: 10.0728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
900280genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.7e-102613790
            EEEETTS-EEEEEE..EEETTEEEE-......TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
      B3 37 tledesgrsWevkliyrkksgryvlt......kGWkeFvkangLkegDfvvFkldgrsef 90
            +++ ++g sWev ++ +k+ + ++l+      +GW+  vk+  L +gD++ F++++ +e 
  900280  2 KIRAQWGSSWEVAISGKKSWNVVYLGrfgafsSGWRCVVKEYPLVVGDTCKFTFIKPDEL 61
            678899********555555558888999999*********************9985444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023625.3E-8164IPR003340B3 DNA binding domain
PROSITE profilePS5086310.066168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-8265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-91665IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MKIRAQWGSS WEVAISGKKS WNVVYLGRFG AFSSGWRCVV KEYPLVVGDT CKFTFIKPDE  60
LLLVVSKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap900280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071344e-60AC007134.10 Arabidopsis thaliana chromosome 2 clone F7H1 map mi398, complete sequence.
GenBankAY2478104e-60AY247810.1 Arabidopsis thaliana hypothetical protein (At2g16210/F7H1.23) mRNA, complete cds; alternatively spliced.
GenBankAY2478114e-60AY247811.1 Arabidopsis thaliana hypothetical protein (At2g16210/F7H1.23) mRNA, complete cds; alternatively spliced.
GenBankAY9247414e-60AY924741.1 Arabidopsis thaliana hypothetical protein (At2g16210) mRNA, complete cds.
GenBankCP0026854e-60CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179217.29e-26Transcriptional factor B3 family protein
SwissprotQ5BPT78e-27Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L1416e-42D7L141_ARALL; Uncharacterized protein
STRINGscaffold_304250.11e-42(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.13e-29B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]