PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

900392

Common Name

ARALYDRAFT_900392

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 401aa MW: 44978 Da PI: 4.5287

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
900392	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3.1e-33	238	292	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fv+av+qLGGs+kAtPk +l++mkv+gLt++hvkSHLQkYR+ 900392 238 KGRMRWTPELHEVFVDAVNQLGGSNKATPKGVLKHMKVEGLTIYHVKSHLQKYRS 292 56****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.043	235	295	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-30	237	293	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-18	237	292	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-24	238	293	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-10	240	291	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-19	320	364	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MIPNDDDDDA NSMENRLLRS IPNDDDDDAN SMENRLLRSI PRELSHTSSL IPPSPNPSEA 60 AEMSFNSEHI QVMENPYHLL SDNGGAVGHI FSSDLHNPFV EPGFNIASPT SFVPETSDWI 120 PSPLPDIFDF PSGSPNQIMD DGVIDEIHKQ SDLPVWDDHL ITDGDSLMSS VLEDLLLDTN 180 FNSASKVQQP SMQAQIQQPQ VVMQQPSPYA EMRPLVRTVS SNSNNNNNSN NNAAAAAKGR 240 MRWTPELHEV FVDAVNQLGG SNKATPKGVL KHMKVEGLTI YHVKSHLQKY RSAKYTPEPS 300 EGPPETKLTP LEQITRRGID VTEALRIQME LQKELHEQLE IQRTMQLRIE EQGKALLMMF 360 EKQNMGFDKP EQEEKRSVKT SENGLEESDS PRPKRPRNEE *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MIPNDDDDDA NSMENRLLRS IPNDDDDDAN SMENRLLRSI PRELSHTSSL IPPSPNPSEA  60
AEMSFNSEHI QVMENPYHLL SDNGGAVGHI FSSDLHNPFV EPGFNIASPT SFVPETSDWI  120
PSPLPDIFDF PSGSPNQIMD DGVIDEIHKQ SDLPVWDDHL ITDGDSLMSS VLEDLLLDTN  180
FNSASKVQQP SMQAQIQQPQ VVMQQPSPYA EMRPLVRTVS SNSNNNNNSN NNAAAAAKGR  240
MRWTPELHEV FVDAVNQLGG SNKATPKGVL KHMKVEGLTI YHVKSHLQKY RSAKYTPEPS  300
EGPPETKLTP LEQITRRGID VTEALRIQME LQKELHEQLE IQRTMQLRIE EQGKALLMMF  360
EKQNMGFDKP EQEEKRSVKT SENGLEESDS PRPKRPRNEE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-29	237	295	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-29	237	295	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-29	237	295	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-29	237	295	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-29	237	295	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-29	237	295	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-29	237	295	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-29	237	295	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00111	ampDAP	Transfer from AT2G20400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	900392

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118313	0.0	AK118313.1 Arabidopsis thaliana At2g20400 mRNA for unknown protein, complete cds, clone: RAFL19-59-J02.
GenBank	BT006119	0.0	BT006119.1 Arabidopsis thaliana clone U50843 unknown protein (At2g20400) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884199.1	0.0	myb family transcription factor PHL4 isoform X2
Swissprot	Q8GXC2	0.0	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	D7L3M9	0.0	D7L3M9_ARALL; Uncharacterized protein
STRING	scaffold_304362.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	1e-177	G2-like family protein

Link Out ? help Back to Top
Phytozome	900392
Entrez Gene	9322344

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]