PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

901071

Common Name

ARALYDRAFT_901071

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 153aa MW: 17453.2 Da PI: 10.0429

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
901071	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.2	5.8e-20	11	56	3	47
--SHHHHHHHHHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvL.Cdaevaviifsstgkly 47 i+ +s rqvtfskRr+ ++KKA+EL++L C+ae+a+i+fs+ +k + 901071 11 IKKESHRQVTFSKRRASLFKKASELCTLmCGAEIAIIVFSPAQKPF 56 8999*********************88**********99855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.2E-26	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.96	1	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-23	2	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-22	10	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-9	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MGRQKIPLVK IKKESHRQVT FSKRRASLFK KASELCTLMC GAEIAIIVFS PAQKPFSFKH 60 TSVESVLDRH LSQNNLPSTQ TQQHRGNVAP SCELNLRLTE ILNESEEEKK KGQAMEDMRK 120 VSARRPMINW WEAPVEEMNM VQLQEMKSAL ES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	3e-15	1	86	1	95	MEF2 CHIMERA
6byy_B	3e-15	1	86	1	95	MEF2 CHIMERA
6byy_C	3e-15	1	86	1	95	MEF2 CHIMERA
6byy_D	3e-15	1	86	1	95	MEF2 CHIMERA
6bz1_A	4e-15	1	86	1	95	MEF2 CHIMERA
6bz1_B	4e-15	1	86	1	95	MEF2 CHIMERA
6bz1_C	4e-15	1	86	1	95	MEF2 CHIMERA
6bz1_D	4e-15	1	86	1	95	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	901071

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020883034.1	7e-81	agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	1e-80	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	D7LIY7	1e-108	D7LIY7_ARALL; Uncharacterized protein
STRING	scaffold_400572.1	1e-109	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	4e-83	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	901071
Entrez Gene	9314868

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]