PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 9011
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 145aa    MW: 16374.5 Da    PI: 9.2606
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
9011genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-1279129155
   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
           sgy+GV++++  ++++A++ + p     + k+++lg +++ae+Aa a++ a  + +g
  9011  79 SGYRGVTQHS-PKKFEARVGVpP-----QsKHVYLGLYDSAEKAAVAYDTALVQARG 129
           89*******9.9******99988.....44*******************99877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-579124IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-1679138IPR016177DNA-binding domain
CDDcd000181.01E-1879138No hitNo description
SMARTSM003809.3E-2180143IPR001471AP2/ERF domain
PROSITE profilePS5103215.06680137IPR001471AP2/ERF domain
PRINTSPR003671.5E-58192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1781137IPR001471AP2/ERF domain
PRINTSPR003671.5E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
RQVYLGGHLE EEFAAEAFDI IVLKLARIGD RSRTGTRPLK MNFPESRYAN LIGFIDSLTL  60
DELIMEVRRH SEGFARGNSG YRGVTQHSPK KFEARVGVPP QSKHVYLGLY DSAEKAAVAY  120
DTALVQARGR RASTNFPIYN YDEHI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0006000.0CP000600.1 Ostreococcus lucimarinus CCE9901 chromosome 20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422573.11e-104predicted protein, partial
TrEMBLA4SB831e-102A4SB83_OSTLU; Uncharacterized protein (Fragment)
STRINGABP008901e-103(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.14e-23AP2 family protein