PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901108
Common NameARALYDRAFT_901108
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19471.5 Da    PI: 7.0151
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901108genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.7e-1328591849
            HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyey 49
              ++KKA+EL++LCd+e  +iifs+ g+++ +
  901108 28 SCLFKKASELCTLCDVETVIIIFSQGGNFFSF 59
            679*************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00432262IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-132483IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.0262463IPR002100Transcription factor, MADS-box
PfamPF003199.3E-122559IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-62540IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-64061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLITTTNKDS SIAFLLCPGV QLSSKSSSCL FKKASELCTL CDVETVIIIF SQGGNFFSFG  60
HPNINVLLDH SRGRVLRDNN TNLAESNMKL YIQMLNESLI EHFLAGINIR KFLNVDADAV  120
GPSTNLKMTL FEKLEEGFLC QGSNHGDKIG YLTELRMLTY KFIDNHKGKF LLEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMap901108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7LJI51e-124D7LJI5_ARALL; Uncharacterized protein
STRINGscaffold_400609.11e-124(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-28AGAMOUS-like 28