PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901333
Common NameARALYDRAFT_901333
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 530aa    MW: 60079.8 Da    PI: 7.59
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901333genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.67e-114715251470
             T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
      B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 
              +++lp +f++ +g+++   k++++ d++g +W+  l+ +k ++r+ l +GWkeF++
  901333 471 FNMTLPIPFTKVNGIQN--AKKMSFLDKHGVKWSTSLRLEKDRQRMRLVGGWKEFCD 525
             569*******9999885..558**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813834.32E-52771IPR001810F-box domain
PfamPF006461.1E-43470IPR001810F-box domain
PfamPF034788.8E-6315367IPR005174Domain unknown function DUF295
PROSITE profilePS508639.615458529IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-9458525IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-10460525IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-8467529No hitNo description
PfamPF023622.3E-9471525IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAEPEIEKMT SSVSKLQLSP PPSVRKEKTF SMPDWSLLPE ELLNLISKHL EDYCFDVVHA  60
RSVCTLWRSI FPFPASLLRP SYSLPSLTKF PYESKDLCTL EKIPLFLFRV RAPHADASEY  120
FLGGIGRDDD DHIELPSPLQ CSVKVKIPDS DPTLINTLDC QVLSLGHQYR MIGCNPKYYK  180
GVAFLPLNKF GGGEEFVVLL NYTKTLLVLR SIEMRWMLLE IPSYGSCSDL ITFRGRFYAA  240
FSNHDIFAID PYSLEATPLM PSEALLDCGS VNDLVPSGND ELFLVEKIIP RTGVIYLYRL  300
TLRLSRLDEE AGKWVEVSEI GDRLLVIGNL GNVCCSAKEL PDGCGLTGNS IVFTHGRKVT  360
YSYKYGVHTG REEDDLNCWR YSRDKCVTIL STSPVVALRK VKDLGILRMA KQHFFKPLLP  420
GFYSHLIDGQ RLTDGWKEFA LSHDLLTLLF SDKREICVST LQCWDLVVVR FNMTLPIPFT  480
KVNGIQNAKK MSFLDKHGVK WSTSLRLEKD RQRMRLVGGW KEFCDVKIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap901333
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069548e-48AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankAK1175148e-48AK117514.1 Arabidopsis thaliana At2g24650 mRNA for unknown protein, complete cds, clone: RAFL17-15-N14.
GenBankCP0026858e-48CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884027.10.0F-box/kelch-repeat protein At1g64840
RefseqXP_020884028.10.0F-box/kelch-repeat protein At1g64840
SwissprotQ9XIR11e-154FBK27_ARATH; F-box/kelch-repeat protein At1g64840
TrEMBLD7LCS60.0D7LCS6_ARALL; Uncharacterized protein
STRINGscaffold_400834.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-14B3 family protein