PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901404
Common NameARALYDRAFT_901404
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 224aa    MW: 24652.5 Da    PI: 8.0115
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901404genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08424526
             --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
              C+++   G Ck+G +C+F H+
   901404  4 VCKYWKD-GNCKRGKQCQFLHS 24
             7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-5125IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-6324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-6324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-7424IPR000571Zinc finger, CCCH-type
SMARTSM003200.723069IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.9E-1737199IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS502949.9163778IPR017986WD40-repeat-containing domain
PROSITE profilePS5008210.2083778IPR001680WD40 repeat
SuperFamilySSF509785.72E-2037205IPR017986WD40-repeat-containing domain
PfamPF004000.155569IPR001680WD40 repeat
PROSITE patternPS0067805670IPR019775WD40 repeat, conserved site
SMARTSM003200.48146185IPR001680WD40 repeat
PfamPF004000.029156185IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MQSVCKYWKD GNCKRGKQCQ FLHSWSCFPG LVIVPALEGK KKELKGITLP QGSDKLFSVS  60
SDGTLRIWDC NSGQAEAGSL ISESPWVFLG LLNAVKAYND QTNKDLHLQG VVGQVHAMIV  120
ANGMLFSGTS SGSILVLKAT DSESDPFKYL TSLQGRHHSG EVTCFIVGGQ LLYYSYVDRT  180
IKVWDLNTLQ CIMTLKHCHI TLMLGQMSDI VFLGWDHKSL GLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMap901404
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937711e-151AB493771.1 Arabidopsis thaliana At5g40880 mRNA for hypothetical protein, partial cds, clone: RAAt5g40880.
GenBankAJ2520651e-151AJ252065.1 Arabidopsis thaliana partial mRNA for zfwd3 protein (zfwd3 gene).
GenBankBT0304001e-151BT030400.1 Arabidopsis thaliana At5g40880 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872138.11e-114zinc finger CCCH domain-containing protein 59 isoform X1
RefseqXP_020872139.11e-115zinc finger CCCH domain-containing protein 59 isoform X2
SwissprotQ9FKR91e-108C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7LDI81e-163D7LDI8_ARALL; Uncharacterized protein
STRINGscaffold_400905.11e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.11e-111C3H family protein