PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901406
Common NameARALYDRAFT_901406, ARALYDRAFT_901407
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 90aa    MW: 10125.5 Da    PI: 6.7851
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901406genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM232.2e-074476133
     NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleev 33
            lppG++F P+d++l+ +yLk+ ++g k+ l +v
  901406 44 LPPGYQFVPSDQQLIFFYLKPYLDGYKNVLLNV 76
            79*********************9988655443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-93674IPR003441NAC domain
PROSITE profilePS5100511.5844489IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MHGRNKHKER CSPEPQPQPP SENPSSSSLA ADNMPPPSTL TYLLPPGYQF VPSDQQLIFF  60
YLKPYLDGYK NVLLNVPIHI YESWPTLSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMap901406
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879736.12e-32uncharacterized protein LOC9313628 isoform X1
TrEMBLD7LDJ14e-58D7LDJ1_ARALL; Uncharacterized protein
STRINGscaffold_400907.17e-59(Arabidopsis lyrata)
STRINGscaffold_400908.17e-59(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2320623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56560.15e-16NAC domain containing protein 65