PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901687
Common NameARALYDRAFT_901687
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 371aa    MW: 42210.3 Da    PI: 7.6313
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901687genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573539.8e-17259352497
  DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkks.isfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
              r++se+  +v+Lq +i+f++ +gk ++dd++++++ +k + i  + +k q+ eKi +L+kK+kk  + + +g++   +++ +++ f+l ++iWg
  901687 259 DRIFSEDQSLVILQEIITFHSVKGKTYKDDLSGICDHLKPKiIPCQPTKAQVKEKIMNLRKKYKKVTSFVTRGEN-GEDESVYRQDFQLWERIWG 352
             69************************************9652689********************9999766665.6677888999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-17259352IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MFYWYAIDDH FGIDLMVRSA GDPNSPFQSL GKFMRDSTTV SVHASMSASE SVSRSGQAHS  60
MGKEENKTRK PIDIIDLDDS DTVEDNNEKM DCNEEEASRE NTLGENRMPD GDFAMAQSLH  120
CDRNAESTKP EKGERKMMKN TDDGVLEPKT GTLESAPDKS VSKSYQEPST SMEQNKTHNI  180
LDEPIDTVDV GGTPFDDKSN TQQDSYPPLR NMRKRKQISY TEGTVRRKQP AEGTLERKKV  240
TKQARLSKPK GNKNKLVKDR IFSEDQSLVI LQEIITFHSV KGKTYKDDLS GICDHLKPKI  300
IPCQPTKAQV KEKIMNLRKK YKKVTSFVTR GENGEDESVY RQDFQLWERI WGDDGILPYK  360
RRGYRSITHH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211216MRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap901687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7LID20.0D7LID2_ARALL; Predicted protein
STRINGscaffold_401188.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.16e-11DNA-binding storekeeper protein-related transcriptional regulator