PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 902147
Common NameARALYDRAFT_902147
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 180aa    MW: 20819.9 Da    PI: 10.0021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
902147genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-093475854
            HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
             Er RR + N++++eL+ l+P++     +K  Ka+i++  + YI++L
  902147 34 TERERRVHFNDRIFELKNLIPNP-----TKGGKASIVQDGIVYINEL 75
            6*********************9.....89999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.39E-82480No hitNo description
Gene3DG3DSA:4.10.280.101.3E-112486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-122490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.1162675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-53281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-73475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDINGGVNVM YFEGFNNGVT RKGRGSRKSR TFPTERERRV HFNDRIFELK NLIPNPTKGG  60
KASIVQDGIV YINELRRLVS ELKSLVEKKR CGGRHKNIDS RNTIYVTGEI EHPFSKMRLN  120
HDEENMEKKP ESDMIDQCSW LERNSKVIQV YVRVIDDEVT IKVVQKKKIN CLFFCLQSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMap902147
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065934e-53AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence.
GenBankCP0026854e-53CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884716.11e-119transcription factor bHLH138, partial
SwissprotQ84TK11e-52BH010_ARATH; Transcription factor bHLH10
TrEMBLD7LD041e-129D7LD04_ARALL; Uncharacterized protein
STRINGscaffold_401648.11e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3036222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.15e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]