PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 902763
Common NameARALYDRAFT_902763
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 185aa    MW: 19849.2 Da    PI: 4.7175
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
902763genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-191464255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
             ykGVr++k++++Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  902763 14 LYKGVRQRKNSNKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 64
            69******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-121364IPR001471AP2/ERF domain
CDDcd000185.67E-291374No hitNo description
SMARTSM003806.9E-321478IPR001471AP2/ERF domain
PROSITE profilePS5103221.2061472IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-201474IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-281473IPR001471AP2/ERF domain
PRINTSPR003678.0E-81526IPR001471AP2/ERF domain
PRINTSPR003678.0E-85474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MQGTSKDNGG RHPLYKGVRQ RKNSNKWVSE IREPRKPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGSQAELN FPNSVSSLPA PTSMSPGDIQ AACASAAAAF GAARDSIVMA NNNSQTSSVA  120
RMNGSYDNTN MNGFMDEDLV FDMPNVLMNM AEGMLLSPPR PPAFDAAYEA DGFTGADDYL  180
WNFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-141077368ATERF1
3gcc_A3e-141077368ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap902763
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069190.0AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608670.0AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466040.0DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884245.11e-134ethylene-responsive transcription factor ERF024
SwissprotQ9SJR01e-110ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLD7LJ391e-133D7LJ39_ARALL; AP2 domain-containing protein
STRINGscaffold_402264.11e-133(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-101ERF family protein