PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

903400

Common Name

ARALYDRAFT_903400

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 250aa MW: 27539.4 Da PI: 9.5553

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
903400	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.9	2.9e-30	104	157	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl 903400 104 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMSVEGLTRENVASHLQKYRL 157 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.0E-19	101	161	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.19	101	160	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-30	103	162	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-24	105	157	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-7	107	156	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MREDNPNWFL RWEEELPSPE ELIPISQTLI TPHLALAFQI GSPNHHLGSK RTTAIYHQKL 60 QPSATPTPTP TPPPMMMNSD FGGGDSTDLG SGSIGGEPAR TLKRPRLVWT PQLHKRFVDA 120 VGHLGIKNAV PKTIMQLMSV EGLTRENVAS HLQKYRLYLR RMQGGNGNGI SGGHVIVSDS 180 ATDRLFAGSP VPVDFLSPEY LMPPLQHSYL GKHVITQQNQ VVRNLRYEDS EYGHGDGGRK 240 ILKLFPAGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	4e-32	104	160	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	903400

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002409	0.0	AC002409.3 Arabidopsis thaliana chromosome 2 clone T20B5 map CIC11C08, complete sequence.
GenBank	AC004261	0.0	AC004261.3 Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete sequence.
GenBank	AY072381	0.0	AY072381.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds.
GenBank	BT000098	0.0	BT000098.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002881752.1	0.0	transcription factor MYBC1
Swissprot	O22210	1e-145	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	D7LGH7	0.0	D7LGH7_ARALL; Myb family transcription factor
STRING	scaffold_402901.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40970.1	1e-119	G2-like family protein

Link Out ? help Back to Top
Phytozome	903400
Entrez Gene	9315966

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]