PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 903597
Common NameARALYDRAFT_655147, ARALYDRAFT_903597
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 216aa    MW: 24504.7 Da    PI: 8.9804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
903597genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00015072123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y+C+ C + F++   L  H+++H
   903597 50 YTCSFCRREFRSAQALGGHMNVH 72
             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-64776No hitNo description
Gene3DG3DSA:3.30.160.609.0E-44875IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2195077IPR007087Zinc finger, C2H2
PfamPF139121.3E-55073IPR007087Zinc finger, C2H2
SMARTSM003550.00615072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKRTHLASFS NTNKTQEEEE EDTNIGDNRV IMNHYKNYEA GLIPWPPKNY TCSFCRREFR  60
SAQALGGHMN VHRRDRAKLR QIPSWLFEPH HHIPIGNPNP NFSSSSSSLT TPAHLEPSLT  120
NQRSKTTTFP SARFDLLDST TSYGGLMVDR EKNKSNVCSR EIKKSAIDAC HSVRCEISRG  180
DLMNKKDDQV MGLELGMSLK NPKQVLDLEL RLGYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-134572229superman protein
2l1o_A5e-134572229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap903597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0059560.0AC005956.4 Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862495.11e-162zinc finger protein 11
RefseqXP_002879984.11e-162zinc finger protein 11
SwissprotQ9SLB81e-144ZFP11_ARATH; Zinc finger protein 11
TrEMBLD7LI581e-161D7LI58_ARALL; Predicted protein
STRINGAl_scaffold_0409_31e-162(Arabidopsis lyrata)
STRINGscaffold_403098.11e-162(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-134zinc finger protein 11