PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 903896
Common NameARALYDRAFT_903896
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 84aa    MW: 9321.07 Da    PI: 10.251
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
903896genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.72.8e-26479781
  DUF260  7 vlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81
            + rrkC+k+C++ap+f  eq +++fa+vhk+FGasn + +l +lp ++r da+ +l+yeA ar+r PvyG+vg+++
  903896  4 FWRRKCVKGCIFAPCFDPEQgTARFAAVHKVFGASNASMILLRLPLHKRLDAVVTLCYEAMARLRGPVYGSVGHLF 79
            679*************666659***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.812183IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-25479IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MPHFWRRKCV KGCIFAPCFD PEQGTARFAA VHKVFGASNA SMILLRLPLH KRLDAVVTLC  60
YEAMARLRGP VYGSVGHLFP PQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-244781790LOB family transfactor Ramosa2.1
5ly0_B5e-244781790LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap903896
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738568e-93AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds.
GenBankAC0023878e-93AC002387.3 Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete sequence.
GenBankCP0026858e-93CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296305.12e-44LOB domain-containing protein 19
SwissprotO221323e-45LBD19_ARATH; LOB domain-containing protein 19
TrEMBLD7LLP54e-55D7LLP5_ARALL; Uncharacterized protein
STRINGscaffold_403397.16e-56(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.11e-47LOB domain-containing protein 19