PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

904128

Common Name

ARALYDRAFT_904128

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 371aa MW: 40659.6 Da PI: 9.1389

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
904128	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.5e-39	76	137	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss 904128 76 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 137 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-25	75	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-33	78	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009416	Biological Process	response to light stimulus
GO:0009845	Biological Process	seed germination
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDATKWTQGF QELMNVKPME QIMIPNNNTH QSNTTSNARP NTILTSNGVS SAGATVSGVS 60 NNNNNTAVVA ERKARPQEKL NCPRCNSTNT KFCYYNNYSL TQPRYFCKGC RRYWTEGGSL 120 RNVPVGGSSR KNKRSSSSNI LQTTPSSLGL TTTLPDLNPP ILFSNQIHNK SKGSSQDLNL 180 LSFPVMQDQH HHHVHMSQFL QMPKMEGNGN LTHQQQPSSS SSLYGSSSSP VSALELLRTG 240 VNVSARSGIN SFMPSGSMMD SNNVLYTSSG FPTMVDYKPS NLSFSTDHQG LGHNSNNRSE 300 ALHNDHHQQG RVLFPFGDQM KELSSSITQE VDHDDNQQQK SHGNNNNNNS SPNNGYWTGM 360 FSTTGGGSSW *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDATKWTQGF QELMNVKPME QIMIPNNNTH QSNTTSNARP NTILTSNGVS SAGATVSGVS  60
NNNNNTAVVA ERKARPQEKL NCPRCNSTNT KFCYYNNYSL TQPRYFCKGC RRYWTEGGSL  120
RNVPVGGSSR KNKRSSSSNI LQTTPSSLGL TTTLPDLNPP ILFSNQIHNK SKGSSQDLNL  180
LSFPVMQDQH HHHVHMSQFL QMPKMEGNGN LTHQQQPSSS SSLYGSSSSP VSALELLRTG  240
VNVSARSGIN SFMPSGSMMD SNNVLYTSSG FPTMVDYKPS NLSFSTDHQG LGHNSNNRSE  300
ALHNDHHQQG RVLFPFGDQM KELSSSITQE VDHDDNQQQK SHGNNNNNNS SPNNGYWTGM  360
FSTTGGGSSW *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00319	DAP	Transfer from AT2G46590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	904128

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ237811	0.0	AJ237811.1 Arabidopsis thaliana mRNA for putative DNA binding protein (partial).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880253.1	0.0	dof zinc finger protein DOF2.5 isoform X1
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	D7LF65	0.0	D7LF65_ARALL; Uncharacterized protein
STRING	scaffold_403629.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	1e-166	Dof family protein

Link Out ? help Back to Top
Phytozome	904128
Entrez Gene	9318144

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]