PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 904139
Common NameARALYDRAFT_904139
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 261aa    MW: 30968.2 Da    PI: 5.181
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
904139genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.3e-193285356
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              + ++f++eq++ Le +Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
    904139 32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 85
              6689*************************************************9 PP
2HD-ZIP_I/II124.26.2e-4032123293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++y+ L+++yd+l+++ e+L+ke+++L +el++
       904139  32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQR 123
                  68**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.43E-181489IPR009057Homeodomain-like
PROSITE profilePS5007117.6532787IPR001356Homeobox domain
CDDcd000867.38E-143088No hitNo description
SMARTSM003897.0E-163091IPR001356Homeobox domain
PfamPF000463.6E-163285IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-183394IPR009057Homeodomain-like
PRINTSPR000317.9E-65867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000317.9E-66783IPR000047Helix-turn-helix motif
PfamPF021833.1E-1687129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRQGGEYSPA MMSSDPFLTM KKIKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV  60
QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY DNLASQFESL KKEKQALVSE  120
LQRLKEAMQK KTQDEERQCC RDQAVVALSS TDHESENEEN RRREPEEVRP EMEMKDEKGH  180
HGVMCDHHNH DDYDDDDGYN NNIKREYFGG FEEEPDHLMN IVEPADSCLT SSDDWRGFKS  240
DTTTLLDQSS NNYPWWDFWS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap904139
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458260.0AY045826.1 Arabidopsis thaliana putative homeodomain transcription factor ATHB-7 (At2g46680) mRNA, complete cds.
GenBankAY0913640.0AY091364.1 Arabidopsis thaliana putative homeodomain transcription factor protein ATHB-7 (At2g46680) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882084.10.0homeobox-leucine zipper protein ATHB-7
SwissprotP468971e-180ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLD7LF770.0D7LF77_ARALL; ATHB-7
STRINGscaffold_403640.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-142homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]