PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

9042

Common Name

SELMODRAFT_430854

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 52aa MW: 6124.82 Da PI: 9.8277

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
9042	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	54.7	2.1e-17	2	52	3	49
zf-Dof 3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv 49 ++ +cprC+s nt+f yynn + qPry C++C+ Wt+GG +r v 9042 2 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRAV 52 67789**************86533444*****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-8	1	52	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-24	2	52	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	15.417	5	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 52 aa Download sequence Send to blast
PDNVYQCPRC QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGGKVR AV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002992665.1	3e-31	uncharacterized protein LOC9630524
TrEMBL	D8TAR0	7e-30	D8TAR0_SELML; Uncharacterized protein
TrEMBL	D8TAS0	2e-30	D8TAS0_SELML; Uncharacterized protein (Fragment)
STRING	EFJ06250	1e-30	(Selaginella moellendorffii)
STRING	EFJ06280	3e-31	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	5e-13	Dof family protein

Link Out ? help Back to Top
Phytozome	9042
Entrez Gene	9630524

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]