PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 904260
Common NameARALYDRAFT_904260
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 472aa    MW: 50310.9 Da    PI: 8.7008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
904260genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.2e-115074327
             S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
              + C +++rtG C yG+rC+++H++
   904260 50 APDCAYYMRTGVCGYGNRCRYNHPR 74
             589********************96 PP
2zf-CCCH41.81.8e-1394119227
              -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
              ++++C+f+++tGtCk+G++CkF+H++
   904260  94 GEPPCQFYLKTGTCKFGASCKFHHPK 119
              579*********************96 PP
3zf-CCCH35.12.2e-11143165527
              --SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
              +C+++++tG+Ck+G +CkF+H++
   904260 143 ECSYYLKTGQCKFGITCKFHHPQ 165
              7********************97 PP
4zf-CCCH37.83.2e-12293319127
              --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
              +++++C+++++tG Ck+G +CkF+H++
   904260 293 PGEPECQYYLKTGDCKFGTSCKFHHPR 319
              5799*********************96 PP
5zf-CCCH32.41.6e-10340365227
              -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
              +  +C f+ ++G+Ck+G++CkF H++
   904260 340 GVQRCTFYVQNGFCKFGSTCKFDHPM 365
              6779********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8824775IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-54774IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-85074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-792119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.15592120IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-1194119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-597118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732138166IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5138165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5142166IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-9143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4144164IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356292320IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6297321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5298320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23338366IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5338365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6340369IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8340365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5344364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MYARNPPING SQSAQAPDWT TPGDADTTGL EESMWRLGLG CESYPERPGA PDCAYYMRTG  60
VCGYGNRCRY NHPRDRASVE AAVRATGQYP ERLGEPPCQF YLKTGTCKFG ASCKFHHPKN  120
AGGSMTHVPL NIYGYPVREG DNECSYYLKT GQCKFGITCK FHHPQPAGTT VPPPPPASAP  180
QFYPSVQSLM PDQYGGPSSS LRVARTLLPG SYMQGAYGPM LLTPGVVPIP GWSPYSAPVS  240
PALSPGAQHA VGATSLYGVT QLSSTTPSLP GVYPSLSSPT GVIQKEQAFP ERPGEPECQY  300
YLKTGDCKFG TSCKFHHPRD RVPPRANCIL SPIGLPLRPG VQRCTFYVQN GFCKFGSTCK  360
FDHPMGTIRY NPSASSLADA PVAPYPVSSL LGALAAAPSS SSTELITGGA KDPYLTGVPT  420
SRSTSNISAG LILSQSGGSI PFSDLQLSSQ TSLPLTGSRI TRQGREIRRS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMap904260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880326.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLD7LHC90.0D7LHC9_ARALL; Zinc finger (CCCH-type) family protein
STRINGscaffold_403761.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein