PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 904389
Common NameARALYDRAFT_904389
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 387aa    MW: 43808.8 Da    PI: 8.6882
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
904389genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.12.5e-25199252155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              k r++W+ eLH++Fv+av++L  ++kA+Pk+ilelm+v+gL++e+v+SHLQk+R+
   904389 199 KSRVVWSIELHQQFVNAVNKL-EIDKAVPKRILELMNVPGLSRENVASHLQKFRM 252
              68*******************.9*******************************8 PP
2Response_reg74.25.2e-25131221109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   +l+vdD+ + + +l+++l +  y +v+ +++++ al++l+e++  +Dl+l D+ mpgm+G++ll++    e +lp+i+++  g  +++   ++ Ga 
        904389  13 ILLVDDDTSCLFILEKMLLRLMY-QVTICSQADVALTILRERKdsFDLVLSDVHMPGMNGYKLLQQVGLLELDLPVIMMSVDGRTTTVMTGINHGAC 108
                   89*********************.***************888889**************************************************** PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ peel +
        904389 109 DYLIKPIRPEELKN 122
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.5E-1421381IPR017053Response regulator B-type, plant
SuperFamilySSF521723.42E-349143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-4010149No hitNo description
SMARTSM004485.0E-2811124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.50212128IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.3E-2213122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.13E-2514127No hitNo description
Gene3DG3DSA:1.10.10.608.5E-27196257IPR009057Homeodomain-like
SuperFamilySSF466898.96E-18197256IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-23199252IPR006447Myb domain, plants
PfamPF002491.6E-5201250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAINDQFPSG LRILLVDDDT SCLFILEKML LRLMYQVTIC SQADVALTIL RERKDSFDLV  60
LSDVHMPGMN GYKLLQQVGL LELDLPVIMM SVDGRTTTVM TGINHGACDY LIKPIRPEEL  120
KNIWQHVVRR KCVKKKELRN SQALEDNKNS GSLETVFSVS ECSEGSLMKR RKKKKKKRSV  180
DREDNENDLD LLDPGNSKKS RVVWSIELHQ QFVNAVNKLE IDKAVPKRIL ELMNVPGLSR  240
ENVASHLQKF RMYLKRLSGE ASQNNDTESI KRYENIQALV SSGQLHPQTL AALYGQPIDN  300
HHSASFGVWI PNDDHLGRSQ NEHFSVDVSS ASNRPVSVAV HGLSSSANFR QRGDVNNNTD  360
HRITQGYGSI VNEESWILER SSRQRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18198258464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174LMKRRKKKK
2168177KRRKKKKKKR
3169175RRKKKKK
4169177RRKKKKKKR
5171177KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap904389
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0997260.0AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
GenBankAY1288870.0AY128887.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875093.10.0two-component response regulator ARR14 isoform X2
SwissprotQ8L9Y30.0ARR14_ARATH; Two-component response regulator ARR14
TrEMBLD7LPV70.0D7LPV7_ARALL; Two-component response regulator
STRINGscaffold_500093.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.10.0response regulator 14