PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

904858

Common Name

ARALYDRAFT_904858

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 122aa MW: 13696.8 Da PI: 8.5805

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
904858	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.3	2e-41	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +CaaCk+lrr+C+kdC+++pyfp ++p+kfa++h+++Ga nv+k+l++lp+++r +a++sl++eA++r++dPvyG+vg+i+ lq q++q++++la++++e+ 904858 5 RCAACKYLRRRCPKDCIFSPYFPPNDPAKFACIHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDPVYGCVGIIHLLQTQIQQTQNQLAKTQAEI 105 6***********************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.292	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-41	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MNPKRCAACK YLRRRCPKDC IFSPYFPPND PAKFACIHRI YGAGNVSKML QQLPDQTRAE 60 AVESLCFEAK CRVDDPVYGC VGIIHLLQTQ IQQTQNQLAK TQAEIAVAQT KFSQTHNSDF 120 M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	904858

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473847	1e-161	AB473847.1 Arabidopsis thaliana ASL14 mRNA for ASYMMETRIC LEAVES2-like 14 protein, complete cds.
GenBank	DQ056609	1e-161	DQ056609.1 Arabidopsis thaliana putative LOB domain protein (At3g26620) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875328.1	5e-87	LOB domain-containing protein 24
Swissprot	P59468	1e-83	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	D7LR74	1e-85	D7LR74_ARALL; Uncharacterized protein
STRING	scaffold_500562.1	2e-86	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-70	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	904858
Entrez Gene	9311396