PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 904950
Common NameARALYDRAFT_904950
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 195aa    MW: 23115.1 Da    PI: 4.835
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
904950genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.78.5e-1881251128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel..v 100
             lp Gf+F+Pt  e+ +++Lkkk+ g+ + + +v +e+ di++ +P+dLp     +e++wy+F+++++        n++t    W   g++++vl  k+++  v
  904950   8 LPIGFKFRPTRFEMANNFLKKKALGQAIIARRVPEEChDIFSRHPRDLPGY--PREEHWYYFCRKRN--------NQVTC-NLWTPIGEETNVLYPKNRQlvV 99 
             699************************99989999989***********43..4789******9855........45544.68***********985554348 PP

     NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
              +++ +++ +++++  e+ dW+++e +l
  904950 100 ATRRRFTLVEKDEE--EEYDWFLDEISL 125
             89999999865554..59******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-217142IPR003441NAC domain
PROSITE profilePS5100524.448142IPR003441NAC domain
PfamPF023652.9E-99124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEPIYRPLPI GFKFRPTRFE MANNFLKKKA LGQAIIARRV PEECHDIFSR HPRDLPGYPR  60
EEHWYYFCRK RNNQVTCNLW TPIGEETNVL YPKNRQLVVA TRRRFTLVEK DEEEEYDWFL  120
DEISLRQTVS FSDWVFCHIK GKKIKPEFDY LPINESESES ESEDEESVDN NPAEILDLLR  180
EQDENVLPPP PPSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap904950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877033.11e-142NAC domain-containing protein 104
TrEMBLD7LLY91e-140D7LLY9_ARALL; Uncharacterized protein
STRINGscaffold_500654.11e-141(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.14e-74NAC family protein