PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

905051

Common Name

ARALYDRAFT_905051

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 120aa MW: 13972.3 Da PI: 10.999

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
905051	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.1	1.2e-13	38	102	2	67
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67 C C++++++ ++dC++a fp+++ +kf +++ +FG ++++ +lk+l++ +r+ ++++l++e+ + 905051 38 CRFCRLQNKQ-VNDCIFASLFPSNDLRKFTIMNLVFGPETLTFFLKDLSHMDRKYTTRTLYFEGSV 102 999**996.789***********************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.099	36	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-11	38	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MHSPHLSSIL QVAKIISNII SFIVFSRERQ IKMNPNLCRF CRLQNKQVND CIFASLFPSN 60 DLRKFTIMNL VFGPETLTFF LKDLSHMDRK YTTRTLYFEG SVSRSMGERS LRKNSKFRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	905051

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001326100.1	1e-23	LOB domain-containing protein 26
Refseq	NP_001326101.1	1e-23	LOB domain-containing protein 26
Refseq	NP_189433.1	1e-23	LOB domain-containing protein 26
Swissprot	Q9LIJ0	1e-24	LBD26_ARATH; LOB domain-containing protein 26
TrEMBL	D7LPM5	1e-81	D7LPM5_ARALL; Uncharacterized protein
STRING	scaffold_500755.1	2e-82	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21012	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27940.1	5e-27	LOB domain-containing protein 26

Link Out ? help Back to Top
Phytozome	905051
Entrez Gene	9313152