PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905190
Common NameARALYDRAFT_905190
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 305aa    MW: 35098.5 Da    PI: 9.2016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905190genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-1564109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W   Ed +l ++v  +G+ +W+ Ia+ m+ gRt+k+c++rw++ 
           905190  64 RGHWRISEDSQLMELVSVYGPQNWNHIAENMQ-GRTGKSCRLRWFNQ 109
                      789999**************************.***********996 PP
2Myb_DNA-binding51.22.9e-16117160247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
           905190 117 RAFSDEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 160
                      689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.57259110IPR017930Myb domain
SMARTSM007174.0E-1163112IPR001005SANT/Myb domain
PfamPF002491.2E-1464109IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-2764157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2465117IPR009057Homeodomain-like
CDDcd001672.56E-1067108No hitNo description
PROSITE profilePS5129425.414111165IPR017930Myb domain
SMARTSM007171.8E-13115163IPR001005SANT/Myb domain
PfamPF002491.3E-12117160IPR001005SANT/Myb domain
CDDcd001671.26E-9118161No hitNo description
Gene3DG3DSA:1.10.10.603.1E-20118165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEMDFSCFQE YPFEFHCRGT FNGFGENNAV SEEFCNKRRM QKKSDDLEKK KKKKKQSGSR  60
VCSRGHWRIS EDSQLMELVS VYGPQNWNHI AENMQGRTGK SCRLRWFNQL DPRINKRAFS  120
DEEEERLLAA HRAFGNKWAM IAKLFNGRTD NALKNHWHVL MARKMRQQST SYVQRFNGSA  180
HKPNTDQKIF NLSPGNVDDD EDMDLKKCSW KMLKEGTTNL KAQYLQEEYC SSRMPMQGPH  240
HPYSTFPADS LALTLHVSIQ EPSSSSSSSS LSLPSSSSAQ HTMVTRYFET IKPPTFIDFL  300
GVGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-31641654105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-31641654105C-Myb DNA-Binding Domain
1msf_C6e-31641654105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13654KRRMQKKSDDLEKKKKKKK
24854KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap905190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727320.0AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877150.10.0transcription factor MYB57
TrEMBLD7LM740.0D7LM74_ARALL; MYB110
STRINGscaffold_500894.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.20.0myb domain protein 110