PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905471
Common NameARALYDRAFT_905471
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 322aa    MW: 36637.8 Da    PI: 4.1612
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905471genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.13.1e-103371644
            HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
  SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
            k +r+v  skRr +++ KA  L+ L +a++av + s++ 
  905471 33 KQQRSVACSKRRPTLFSKAADLCLLSGANIAVFVTSPDE 71
            678*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.5632068IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-142079IPR002100Transcription factor, MADS-box
CDDcd002661.93E-2121104No hitNo description
SuperFamilySSF554557.59E-1622113IPR002100Transcription factor, MADS-box
PfamPF003199.3E-103371IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEKTLIMPSK VSDCTMRKRG TKRKIEIQKR FTKQQRSVAC SKRRPTLFSK AADLCLLSGA  60
NIAVFVTSPD ENSDIVYSFS GYSPASEIVD CYLNAKSPPN IINPQSKLGF WWEDPDLYLY  120
CDDLSELSII EDRMMRTKKH LLDCLEKKEK SQFLSKSDQN PNTDEIFNNG QNPSTSSPYS  180
SHIVSFDQNS YSSLDKLCGE PSSQVTCYDQ NPIFSVGESL CDQSRYLVNE DPGFVNCLCE  240
TGEENNGMSV AQETQTQSML IEDQSFWENL LKDEDNVFGL LNDNNLEVPL QDRSSTNEED  300
EFMIDISEFL SEEEEFEWPL F*
Cis-element ? help Back to Top
SourceLink
PlantRegMap905471
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792841e-128AC079284.4 Arabidopsis thaliana chromosome 1 BAC F8A12 genomic sequence, complete sequence.
GenBankCP0026841e-128CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882147.10.0uncharacterized protein LOC9313369
TrEMBLD7LME10.0D7LME1_ARALL; Uncharacterized protein
STRINGscaffold_501175.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.11e-153M-type_MADS family protein