PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

905655

Common Name

ARALYDRAFT_905655

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 219aa MW: 24714.4 Da PI: 8.9965

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
905655	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	78.9	1.4e-24	16	91	10	81
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec...eaesssss 81 i T+ R R+Rl+++ca ++F+L++eLGf++d++t+ WLl++a+pai ++tg s + e+ +s ++ 905655 16 RIPTSSKDRSNRIRLPVSCASQIFQLTQELGFKTDGETVGWLLRNAEPAIFAATGHsvnttS---N-ETsneFIHSYMNM 91 57799999************************************************654331...2.1111111222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.434	12	68	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.5E-20	17	90	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MVSRNNKNNI ERKERRIPTS SKDRSNRIRL PVSCASQIFQ LTQELGFKTD GETVGWLLRN 60 AEPAIFAATG HSVNTTSNET SNEFIHSYMN MGNHNNYHFT DTSGVVYHNN YNVTIDNSIH 120 YADTSGVVSH QRENITGHHG LVFPTAAMTE YGPSTSFPAK DMRENGHLMV NHNSRPVMLR 180 PSMPQQQPQP QPLFDEFNKV EMGNSKQAMS PHKTNDRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	905655

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875712.1	1e-164	transcription factor TCP16
TrEMBL	D7LNL1	1e-163	D7LNL1_ARALL; Uncharacterized protein
STRING	scaffold_501359.1	1e-163	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16163	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	1e-29	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	905655
Entrez Gene	9311780