PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

905662

Common Name

ARALYDRAFT_905662

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 180aa MW: 20214.4 Da PI: 8.9127

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
905662	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.2	2.2e-28	14	157	5	105
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg................. 88 +++ ++h k ggRdRR+R++ ++a ++F+L++eLGf++d++t+ WLlq+a+pai ++tg +++++ ++++++++ + + + 905662 14 TRTPRDRHVKIGGRDRRIRIPPSVAPQVFKLTKELGFKTDGETVGWLLQNAEPAIFAATGHgvNTTPS-DVTHVHNHTNRG---YNhftinigdhnnvfsytg 112 56678********************************************************7633333.332222222222...2233344566666667777 PP TCP 89 ............................kaaksaakskksqksaa 105 k+ s+++++++q++++ 905662 113 anighhemvfpgvtmteyaasstlpardKEGVSNQNQEQQQQQPQ 157 777777778888777776666666655433333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-25	17	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	22.673	17	71	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MDSRNKINNR QKATRTPRDR HVKIGGRDRR IRIPPSVAPQ VFKLTKELGF KTDGETVGWL 60 LQNAEPAIFA ATGHGVNTTP SDVTHVHNHT NRGYNHFTIN IGDHNNVFSY TGANIGHHEM 120 VFPGVTMTEY AASSTLPARD KEGVSNQNQE QQQQQPQPQF ELGKVEMPAD EKTYVWREE*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00390	DAP	Transfer from AT3G45150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	905662

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138649	2e-79	AL138649.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3.
GenBank	CP002686	2e-79	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875715.1	1e-133	transcription factor TCP16
Swissprot	Q9M1U4	2e-56	TCP16_ARATH; Transcription factor TCP16
TrEMBL	D7LNL8	1e-131	D7LNL8_ARALL; Uncharacterized protein
STRING	scaffold_501366.1	1e-132	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	1e-48	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	905662
Entrez Gene	9311783

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]